Detailed information of SNP:
|
SNP ID:
sf0203016806(Gbrowse)
Chromosome: chr02 Position: 3016806 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1357 | 54.16% | 45.84% |
| All Indica | 744 | 37.23% | 62.77% |
| All Japonica | 494 | 75.91% | 24.09% |
| Aus | 64 | 73.44% | 26.56% |
| Indica I | 341 | 34.31% | 65.69% |
| Indica II | 204 | 30.88% | 69.12% |
| Indica Intermediate | 199 | 48.74% | 51.26% |
| Temperate Japonica | 333 | 89.79% | 10.21% |
| Tropical Japonica | 93 | 21.51% | 78.49% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203016806 | C->T | LOC_Os02g06050(LOC_Os02g06050.1) | Non-Synonymous SNP |