Detailed information of SNP:
|
SNP ID:
sf0203033048(Gbrowse)
Chromosome: chr02 Position: 3033048 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 50.07% | 49.93% |
| All Indica | 798 | 36.72% | 63.28% |
| All Japonica | 497 | 66.20% | 33.80% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 30.21% | 69.79% |
| Indica II | 213 | 36.62% | 63.38% |
| Indica Intermediate | 211 | 48.34% | 51.66% |
| Temperate Japonica | 335 | 78.51% | 21.49% |
| Tropical Japonica | 94 | 17.02% | 82.98% |
| Japonica Intermediate | 68 | 73.53% | 26.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203033048 | C->T | INTERGENIC | None |