Detailed information of SNP:
|
SNP ID:
sf0203058115(Gbrowse)
Chromosome: chr02 Position: 3058115 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1412 | 53.68% | 46.32% |
| All Indica | 797 | 41.03% | 58.97% |
| All Japonica | 493 | 68.15% | 31.85% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 373 | 37.00% | 63.00% |
| Indica II | 213 | 38.50% | 61.50% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 333 | 80.78% | 19.22% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 66 | 75.76% | 24.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203058115 | C->T | INTERGENIC | None |