Detailed information of SNP:
|
SNP ID:
sf0203088741(Gbrowse)
Chromosome: chr02 Position: 3088741 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 96.18% | 3.82% |
| All Indica | 793 | 95.59% | 4.41% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203088741 | G->A | INTERGENIC | None |