Detailed information of SNP:
|
SNP ID:
sf0203127406(Gbrowse)
Chromosome: chr02 Position: 3127406 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1348 | 95.10% | 4.90% |
| All Indica | 763 | 100.00% | 0.00% |
| All Japonica | 463 | 86.18% | 13.82% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 354 | 100.00% | 0.00% |
| Indica II | 201 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 100.00% | 0.00% |
| Temperate Japonica | 314 | 80.57% | 19.43% |
| Tropical Japonica | 85 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 95.31% | 4.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203127406 | C->T | LOC_Os02g06260(LOC_Os02g06260.1) | Non-Synonymous SNP |