Detailed information of SNP:
|
SNP ID:
sf0203129509(Gbrowse)
Chromosome: chr02 Position: 3129509 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 54.55% | 45.45% |
| All Indica | 799 | 44.31% | 55.69% |
| All Japonica | 497 | 75.25% | 24.75% |
| Aus | 67 | 17.91% | 82.09% |
| Indica I | 375 | 44.53% | 55.47% |
| Indica II | 213 | 47.89% | 52.11% |
| Indica Intermediate | 211 | 40.28% | 59.72% |
| Temperate Japonica | 335 | 66.87% | 33.13% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 83.82% | 16.18% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203129509 | T->C | INTERGENIC | None |