Detailed information of SNP:
|
SNP ID:
sf0203136149(Gbrowse)
Chromosome: chr02 Position: 3136149 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 88.34% | 11.66% |
| All Indica | 797 | 79.67% | 20.33% |
| All Japonica | 495 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 72.92% | 27.08% |
| Indica II | 213 | 86.38% | 13.62% |
| Indica Intermediate | 211 | 84.83% | 15.17% |
| Temperate Japonica | 333 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203136149 | C->T | INTERGENIC | None |