Detailed information of SNP:
SNP ID:
sf0203208879(Gbrowse)
Chromosome: chr02 Position: 3208879 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
---|---|---|---|
All | 1413 | 96.11% | 3.89% |
All Indica | 793 | 93.19% | 6.81% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 373 | 89.54% | 10.46% |
Indica II | 209 | 97.61% | 2.39% |
Indica Intermediate | 211 | 95.26% | 4.74% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0203208879 | A->C | INTERGENIC | None |