Detailed information of SNP:



SNP ID: sf0203208879(Gbrowse)

Chromosome: chr02

Position: 3208879
Major allele: A

Minor allele: C

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of C(minor allele)
All1413 96.11% 3.89%
All Indica793 93.19% 6.81%
All Japonica497 100.00% 0.00%
Aus67 100.00% 0.00%
Indica I373 89.54% 10.46%
Indica II209 97.61% 2.39%
Indica Intermediate211 95.26% 4.74%
Temperate Japonica335 100.00% 0.00%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 100.00% 0.00%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 97.62% 2.38%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0203208879 A->C INTERGENIC None