Detailed information of SNP:
|
SNP ID:
sf0203225915(Gbrowse)
Chromosome: chr02 Position: 3225915 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 94.82% | 5.18% |
| All Indica | 794 | 93.32% | 6.68% |
| All Japonica | 492 | 96.34% | 3.66% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 95.44% | 4.56% |
| Indica II | 210 | 88.57% | 11.43% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 331 | 96.98% | 3.02% |
| Tropical Japonica | 93 | 92.47% | 7.53% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203225915 | A->C | INTERGENIC | None |