Detailed information of SNP:
|
SNP ID:
sf0203254323(Gbrowse)
Chromosome: chr02 Position: 3254323 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1241 | 72.20% | 27.80% |
| All Indica | 714 | 62.18% | 37.82% |
| All Japonica | 410 | 82.93% | 17.07% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 331 | 62.24% | 37.76% |
| Indica II | 192 | 52.60% | 47.40% |
| Indica Intermediate | 191 | 71.73% | 28.27% |
| Temperate Japonica | 270 | 78.89% | 21.11% |
| Tropical Japonica | 84 | 96.43% | 3.57% |
| Japonica Intermediate | 56 | 82.14% | 17.86% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 37 | 86.49% | 13.51% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203254323 | G->A | INTERGENIC | None |