Detailed information of SNP:
|
SNP ID:
sf0203256465(Gbrowse)
Chromosome: chr02 Position: 3256465 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 91.20% | 8.80% |
| All Indica | 787 | 88.06% | 11.94% |
| All Japonica | 479 | 94.15% | 5.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 85.60% | 14.40% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 208 | 80.29% | 19.71% |
| Temperate Japonica | 317 | 91.80% | 8.20% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203256465 | C->T | LOC_Os02g06520(LOC_Os02g06520.1) | Synonymous |