Detailed information of SNP:
|
SNP ID:
sf0203269605(Gbrowse)
Chromosome: chr02 Position: 3269605 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1357 | 95.21% | 4.79% |
| All Indica | 749 | 96.80% | 3.20% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 57 | 35.09% | 64.91% |
| Indica I | 345 | 95.94% | 4.06% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 192 | 95.31% | 4.69% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203269605 | A->G | INTERGENIC | None |