Detailed information of SNP:
|
SNP ID:
sf0203336655(Gbrowse)
Chromosome: chr02 Position: 3336655 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1306 | 94.95% | 5.05% |
| All Indica | 791 | 99.49% | 0.51% |
| All Japonica | 395 | 86.58% | 13.42% |
| Aus | 66 | 90.91% | 9.09% |
| Indica I | 367 | 98.91% | 1.09% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 256 | 97.66% | 2.34% |
| Tropical Japonica | 87 | 51.72% | 48.28% |
| Japonica Intermediate | 52 | 90.38% | 9.62% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203336655 | C->T | LOC_Os02g06630(LOC_Os02g06630.1) | Non-Synonymous SNP |