Detailed information of SNP:
|
SNP ID:
sf0203404861(Gbrowse)
Chromosome: chr02 Position: 3404861 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 91.38% | 8.62% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 496 | 78.83% | 21.17% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 373 | 98.39% | 1.61% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 97.62% | 2.38% |
| Temperate Japonica | 334 | 74.55% | 25.45% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203404861 | A->G | LOC_Os02g06750(LOC_Os02g06750.1) | Synonymous |