Detailed information of SNP:



SNP ID: sf0203404861(Gbrowse)

Chromosome: chr02

Position: 3404861
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1415 91.38% 8.62%
All Indica796 98.37% 1.63%
All Japonica496 78.83% 21.17%
Aus67 100.00% 0.00%
Indica I373 98.39% 1.61%
Indica II213 99.06% 0.94%
Indica Intermediate210 97.62% 2.38%
Temperate Japonica334 74.55% 25.45%
Tropical Japonica94 98.94% 1.06%
Japonica Intermediate68 72.06% 27.94%
Group VI/Aromatic14 92.86% 7.14%
Intermediate42 92.86% 7.14%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0203404861 A->G LOC_Os02g06750(LOC_Os02g06750.1) Synonymous