Detailed information of SNP:
|
SNP ID:
sf0203405623(Gbrowse)
Chromosome: chr02 Position: 3405623 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 95.48% | 4.52% |
| All Indica | 777 | 92.79% | 7.21% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 367 | 96.73% | 3.27% |
| Indica II | 207 | 91.79% | 8.21% |
| Indica Intermediate | 203 | 86.70% | 13.30% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203405623 | C->T | LOC_Os02g06750(LOC_Os02g06750.1) | INTRON |