Detailed information of SNP:
|
SNP ID:
sf0203416073(Gbrowse)
Chromosome: chr02 Position: 3416073 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.34% | 12.66% |
| All Indica | 796 | 98.37% | 1.63% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 29.85% | 70.15% |
| Indica I | 374 | 99.20% | 0.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 96.67% | 3.33% |
| Temperate Japonica | 335 | 74.93% | 25.07% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203416073 | G->T | LOC_Os02g06770(LOC_Os02g06770.3) | INTRON |
| sf0203416073 | G->T | LOC_Os02g06770(LOC_Os02g06770.2) | INTRON |
| sf0203416073 | G->T | LOC_Os02g06770(LOC_Os02g06770.1) | INTRON |