Detailed information of SNP:
|
SNP ID:
sf0203428394(Gbrowse)
Chromosome: chr02 Position: 3428394 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 96.30% | 3.70% |
| All Indica | 785 | 94.01% | 5.99% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 368 | 95.65% | 4.35% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 204 | 95.10% | 4.90% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203428394 | T->C | INTERGENIC | None |