Detailed information of SNP:



SNP ID: sf0203433299(Gbrowse)

Chromosome: chr02

Position: 3433299
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 73.52% 26.48%
All Indica796 96.36% 3.64%
All Japonica497 34.00% 66.00%
Aus67 89.55% 10.45%
Indica I374 97.06% 2.94%
Indica II213 99.06% 0.94%
Indica Intermediate209 92.34% 7.66%
Temperate Japonica335 30.15% 69.85%
Tropical Japonica94 45.74% 54.26%
Japonica Intermediate68 36.76% 63.24%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 73.81% 26.19%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0203433299 T->C LOC_Os02g06800(LOC_Os02g06800.1) SNPs that disrupt stop codons