Detailed information of SNP:
|
SNP ID:
sf0203433299(Gbrowse)
Chromosome: chr02 Position: 3433299 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1416 | 73.52% | 26.48% |
| All Indica | 796 | 96.36% | 3.64% |
| All Japonica | 497 | 34.00% | 66.00% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 209 | 92.34% | 7.66% |
| Temperate Japonica | 335 | 30.15% | 69.85% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203433299 | T->C | LOC_Os02g06800(LOC_Os02g06800.1) | SNPs that disrupt stop codons |