Detailed information of SNP:
|
SNP ID:
sf0203433341(Gbrowse)
Chromosome: chr02 Position: 3433341 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 72.70% | 27.30% |
| All Indica | 797 | 95.36% | 4.64% |
| All Japonica | 496 | 33.47% | 66.53% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 90.48% | 9.52% |
| Temperate Japonica | 334 | 29.34% | 70.66% |
| Tropical Japonica | 94 | 44.68% | 55.32% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203433341 | A->G | INTERGENIC | None |