Detailed information of SNP:



SNP ID: sf0203435443(Gbrowse)

Chromosome: chr02

Position: 3435443
Major allele: T

Minor allele: G

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of T(major allele)Frequency of G(minor allele)
All1371 59.15% 40.85%
All Indica772 86.79% 13.21%
All Japonica486 21.81% 78.19%
Aus66 13.64% 86.36%
Indica I360 89.17% 10.83%
Indica II208 90.38% 9.62%
Indica Intermediate204 78.92% 21.08%
Temperate Japonica328 16.46% 83.54%
Tropical Japonica91 38.46% 61.54%
Japonica Intermediate67 25.37% 74.63%
Group VI/Aromatic10 70.00% 30.00%
Intermediate37 51.35% 48.65%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0203435443 G->T LOC_Os02g06810(LOC_Os02g06810.1) Non-Synonymous SNP