Detailed information of SNP:
|
SNP ID:
sf0203435443(Gbrowse)
Chromosome: chr02 Position: 3435443 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1371 | 59.15% | 40.85% |
| All Indica | 772 | 86.79% | 13.21% |
| All Japonica | 486 | 21.81% | 78.19% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 360 | 89.17% | 10.83% |
| Indica II | 208 | 90.38% | 9.62% |
| Indica Intermediate | 204 | 78.92% | 21.08% |
| Temperate Japonica | 328 | 16.46% | 83.54% |
| Tropical Japonica | 91 | 38.46% | 61.54% |
| Japonica Intermediate | 67 | 25.37% | 74.63% |
| Group VI/Aromatic | 10 | 70.00% | 30.00% |
| Intermediate | 37 | 51.35% | 48.65% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203435443 | G->T | LOC_Os02g06810(LOC_Os02g06810.1) | Non-Synonymous SNP |