Detailed information of SNP:
|
SNP ID:
sf0203441065(Gbrowse)
Chromosome: chr02 Position: 3441065 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 67.87% | 32.13% |
| All Indica | 797 | 96.86% | 3.14% |
| All Japonica | 493 | 29.41% | 70.59% |
| Aus | 67 | 13.43% | 86.57% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 209 | 93.78% | 6.22% |
| Temperate Japonica | 333 | 33.63% | 66.37% |
| Tropical Japonica | 92 | 26.09% | 73.91% |
| Japonica Intermediate | 68 | 13.24% | 86.76% |
| Group VI/Aromatic | 14 | 50.00% | 50.00% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203441065 | C->T | LOC_Os02g06820(LOC_Os02g06820.1) | Synonymous |