Detailed information of SNP:
|
SNP ID:
sf0203448914(Gbrowse)
Chromosome: chr02 Position: 3448914 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 76.72% | 23.28% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 495 | 41.82% | 58.18% |
| Aus | 66 | 89.39% | 10.61% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 333 | 41.74% | 58.26% |
| Tropical Japonica | 94 | 45.74% | 54.26% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203448914 | A->G | LOC_Os02g06830(LOC_Os02g06830.2) | INTRON |
| sf0203448914 | A->G | LOC_Os02g06830(LOC_Os02g06830.1) | INTRON |