Detailed information of SNP:
|
SNP ID:
sf0203468896(Gbrowse)
Chromosome: chr02 Position: 3468896 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 77.74% | 22.26% |
| All Indica | 799 | 97.87% | 2.13% |
| All Japonica | 493 | 42.39% | 57.61% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 97.07% | 2.93% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 333 | 41.74% | 58.26% |
| Tropical Japonica | 94 | 46.81% | 53.19% |
| Japonica Intermediate | 66 | 39.39% | 60.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203468896 | T->G | LOC_Os02g06880(LOC_Os02g06880.1) | UTR_3_PRIME |