Detailed information of SNP:
|
SNP ID:
sf0203485362(Gbrowse)
Chromosome: chr02 Position: 3485362 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1243 | 87.21% | 12.79% |
| All Indica | 795 | 99.62% | 0.38% |
| All Japonica | 366 | 63.66% | 36.34% |
| Aus | 34 | 70.59% | 29.41% |
| Indica I | 372 | 99.46% | 0.54% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 245 | 55.10% | 44.90% |
| Tropical Japonica | 74 | 91.89% | 8.11% |
| Japonica Intermediate | 47 | 63.83% | 36.17% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 34 | 88.24% | 11.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203485362 | T->C | INTERGENIC | None |