Detailed information of SNP:
|
SNP ID:
sf0203528642(Gbrowse)
Chromosome: chr02 Position: 3528642 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 94.99% | 5.01% |
| All Indica | 799 | 99.37% | 0.63% |
| All Japonica | 496 | 90.52% | 9.48% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 55.91% | 44.09% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203528642 | C->T | LOC_Os02g06950(LOC_Os02g06950.1) | INTRON |