Detailed information of SNP:
|
SNP ID:
sf0203590900(Gbrowse)
Chromosome: chr02 Position: 3590900 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1136 | 98.24% | 1.76% |
| All Indica | 616 | 100.00% | 0.00% |
| All Japonica | 402 | 97.51% | 2.49% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 271 | 100.00% | 0.00% |
| Indica II | 176 | 100.00% | 0.00% |
| Indica Intermediate | 169 | 100.00% | 0.00% |
| Temperate Japonica | 270 | 99.26% | 0.74% |
| Tropical Japonica | 77 | 97.40% | 2.60% |
| Japonica Intermediate | 55 | 89.09% | 10.91% |
| Group VI/Aromatic | 14 | 57.14% | 42.86% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203590900 | A->G | LOC_Os02g07020(LOC_Os02g07020.1) | INTRON |