Detailed information of SNP:
|
SNP ID:
sf0203685321(Gbrowse)
Chromosome: chr02 Position: 3685321 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 83.36% | 16.64% |
| All Indica | 799 | 95.74% | 4.26% |
| All Japonica | 496 | 61.49% | 38.51% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 94.13% | 5.87% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 48.20% | 51.80% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203685321 | T->C | INTERGENIC | None |