Detailed information of SNP:
|
SNP ID:
sf0203767832(Gbrowse)
Chromosome: chr02 Position: 3767832 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1241 | 96.86% | 3.14% |
| All Indica | 685 | 100.00% | 0.00% |
| All Japonica | 441 | 91.38% | 8.62% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 318 | 100.00% | 0.00% |
| Indica II | 183 | 100.00% | 0.00% |
| Indica Intermediate | 184 | 100.00% | 0.00% |
| Temperate Japonica | 299 | 89.63% | 10.37% |
| Tropical Japonica | 83 | 96.39% | 3.61% |
| Japonica Intermediate | 59 | 93.22% | 6.78% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 97.14% | 2.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203767832 | A->T | INTERGENIC | None |