Detailed information of SNP:
|
SNP ID:
sf0203808443(Gbrowse)
Chromosome: chr02 Position: 3808443 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1358 | 95.58% | 4.42% |
| All Indica | 760 | 92.37% | 7.63% |
| All Japonica | 494 | 100.00% | 0.00% |
| Aus | 50 | 98.00% | 2.00% |
| Indica I | 360 | 92.50% | 7.50% |
| Indica II | 200 | 96.00% | 4.00% |
| Indica Intermediate | 200 | 88.50% | 11.50% |
| Temperate Japonica | 333 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 97.50% | 2.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203808443 | C->T | INTERGENIC | None |