Detailed information of SNP:
SNP ID:
sf0203895376(Gbrowse)
Chromosome: chr02 Position: 3895376 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
---|---|---|---|
All | 1306 | 90.20% | 9.80% |
All Indica | 695 | 84.60% | 15.40% |
All Japonica | 497 | 100.00% | 0.00% |
Aus | 59 | 71.19% | 28.81% |
Indica I | 338 | 86.39% | 13.61% |
Indica II | 185 | 84.32% | 15.68% |
Indica Intermediate | 172 | 81.40% | 18.60% |
Temperate Japonica | 335 | 100.00% | 0.00% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0203895376 | G->A | LOC_Os02g07520(LOC_Os02g07520.1) | SNPs that introduce stop codons |