Detailed information of SNP:
|
SNP ID:
sf0203895646(Gbrowse)
Chromosome: chr02 Position: 3895646 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 84.52% | 15.48% |
| All Indica | 788 | 96.70% | 3.30% |
| All Japonica | 497 | 62.78% | 37.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 95.16% | 4.84% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 49.55% | 50.45% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203895646 | T->C | INTERGENIC | None |