Detailed information of SNP:
|
SNP ID:
sf0203898219(Gbrowse)
Chromosome: chr02 Position: 3898219 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1368 | 93.27% | 6.73% |
| All Indica | 789 | 99.49% | 0.51% |
| All Japonica | 461 | 83.08% | 16.92% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 371 | 99.46% | 0.54% |
| Indica II | 207 | 99.52% | 0.48% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 313 | 89.46% | 10.54% |
| Tropical Japonica | 87 | 68.97% | 31.03% |
| Japonica Intermediate | 61 | 70.49% | 29.51% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 80.00% | 20.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203898219 | T->C | INTERGENIC | None |