Detailed information of SNP:
|
SNP ID:
sf0203899411(Gbrowse)
Chromosome: chr02 Position: 3899411 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1406 | 85.35% | 14.65% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 484 | 59.92% | 40.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 327 | 45.57% | 54.43% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 63 | 77.78% | 22.22% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203899411 | C->T | LOC_Os02g07530(LOC_Os02g07530.1) | Synonymous |