Detailed information of SNP:
|
SNP ID:
sf0203965190(Gbrowse)
Chromosome: chr02 Position: 3965190 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 83.83% | 16.17% |
| All Indica | 797 | 95.73% | 4.27% |
| All Japonica | 496 | 62.30% | 37.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 95.45% | 4.55% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 210 | 94.76% | 5.24% |
| Temperate Japonica | 335 | 49.25% | 50.75% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 67 | 79.10% | 20.90% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203965190 | C->T | LOC_Os02g07640(LOC_Os02g07640.1) | INTRON |