Detailed information of SNP:
|
SNP ID:
sf0203965750(Gbrowse)
Chromosome: chr02 Position: 3965750 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 50.28% | 49.72% |
| All Indica | 798 | 59.65% | 40.35% |
| All Japonica | 497 | 37.63% | 62.37% |
| Aus | 67 | 46.27% | 53.73% |
| Indica I | 375 | 53.07% | 46.93% |
| Indica II | 212 | 58.49% | 41.51% |
| Indica Intermediate | 211 | 72.51% | 27.49% |
| Temperate Japonica | 335 | 51.04% | 48.96% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203965750 | T->C | INTERGENIC | None |