Detailed information of SNP:
|
SNP ID:
sf0203994443(Gbrowse)
Chromosome: chr02 Position: 3994443 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 81.82% | 18.18% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 497 | 49.30% | 50.70% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 31.04% | 68.96% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0203994443 | G->A | LOC_Os02g07670(LOC_Os02g07670.4) | INTRON |
| sf0203994443 | G->A | LOC_Os02g07670(LOC_Os02g07670.3) | UTR_3_PRIME |
| sf0203994443 | G->A | LOC_Os02g07670(LOC_Os02g07670.1) | INTRON |
| sf0203994443 | G->A | LOC_Os02g07670(LOC_Os02g07670.2) | INTRON |