Detailed information of SNP:
|
SNP ID:
sf0204032923(Gbrowse)
Chromosome: chr02 Position: 4032923 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 67.94% | 32.06% |
| All Indica | 798 | 64.04% | 35.96% |
| All Japonica | 493 | 73.83% | 26.17% |
| Aus | 67 | 88.06% | 11.94% |
| Indica I | 375 | 55.47% | 44.53% |
| Indica II | 213 | 64.79% | 35.21% |
| Indica Intermediate | 210 | 78.57% | 21.43% |
| Temperate Japonica | 334 | 90.42% | 9.58% |
| Tropical Japonica | 92 | 22.83% | 77.17% |
| Japonica Intermediate | 67 | 61.19% | 38.81% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204032923 | C->T | LOC_Os02g07730(LOC_Os02g07730.1) | Synonymous |