Detailed information of SNP:
|
SNP ID:
sf0204065905(Gbrowse)
Chromosome: chr02 Position: 4065905 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 52.75% | 47.25% |
| All Indica | 797 | 64.62% | 35.38% |
| All Japonica | 497 | 30.99% | 69.01% |
| Aus | 66 | 56.06% | 43.94% |
| Indica I | 374 | 60.43% | 39.57% |
| Indica II | 212 | 74.06% | 25.94% |
| Indica Intermediate | 211 | 62.56% | 37.44% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 36.76% | 63.24% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204065905 | C->T | INTERGENIC | None |