Detailed information of SNP:
|
SNP ID:
sf0204076181(Gbrowse)
Chromosome: chr02 Position: 4076181 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 78.21% | 21.79% |
| All Indica | 787 | 65.31% | 34.69% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 65 | 61.54% | 38.46% |
| Indica I | 375 | 61.07% | 38.93% |
| Indica II | 205 | 74.63% | 25.37% |
| Indica Intermediate | 207 | 63.77% | 36.23% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204076181 | T->A | LOC_Os02g07780(LOC_Os02g07780.1) | INTRON |
| sf0204076181 | T->A | LOC_Os02g07780(LOC_Os02g07780.2) | UTR_3_PRIME |