Detailed information of SNP:
|
SNP ID:
sf0204079624(Gbrowse)
Chromosome: chr02 Position: 4079624 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 59.24% | 40.76% |
| All Indica | 798 | 73.81% | 26.19% |
| All Japonica | 497 | 31.19% | 68.81% |
| Aus | 67 | 77.61% | 22.39% |
| Indica I | 375 | 70.13% | 29.87% |
| Indica II | 213 | 71.36% | 28.64% |
| Indica Intermediate | 210 | 82.86% | 17.14% |
| Temperate Japonica | 335 | 13.73% | 86.27% |
| Tropical Japonica | 94 | 88.30% | 11.70% |
| Japonica Intermediate | 68 | 38.24% | 61.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204079624 | G->T | LOC_Os02g07790(LOC_Os02g07790.1) | INTRON |