Detailed information of SNP:
|
SNP ID:
sf0204153191(Gbrowse)
Chromosome: chr02 Position: 4153191 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 87.91% | 12.09% |
| All Indica | 795 | 83.52% | 16.48% |
| All Japonica | 496 | 97.38% | 2.62% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 76.53% | 23.47% |
| Indica Intermediate | 207 | 71.01% | 28.99% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 90.32% | 9.68% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204153191 | C->T | INTERGENIC | None |