Detailed information of SNP:
|
SNP ID:
sf0204233995(Gbrowse)
Chromosome: chr02 Position: 4233995 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1408 | 63.35% | 36.65% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 489 | 14.72% | 85.28% |
| Aus | 66 | 7.58% | 92.42% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 332 | 18.67% | 81.33% |
| Tropical Japonica | 92 | 5.43% | 94.57% |
| Japonica Intermediate | 65 | 7.69% | 92.31% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204233995 | C->T | INTERGENIC | None |