Detailed information of SNP:
|
SNP ID:
sf0204345671(Gbrowse)
Chromosome: chr02 Position: 4345671 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1385 | 57.26% | 42.74% |
| All Indica | 769 | 91.29% | 8.71% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 65 | 98.46% | 1.54% |
| Indica I | 360 | 89.72% | 10.28% |
| Indica II | 208 | 94.71% | 5.29% |
| Indica Intermediate | 201 | 90.55% | 9.45% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 40 | 47.50% | 52.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204345671 | C->T | INTERGENIC | None |