Detailed information of SNP:
|
SNP ID:
sf0204366433(Gbrowse)
Chromosome: chr02 Position: 4366433 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1404 | 53.21% | 46.79% |
| All Indica | 784 | 86.61% | 13.39% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 369 | 91.87% | 8.13% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 203 | 67.00% | 33.00% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 40.48% | 59.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204366433 | A->G | INTERGENIC | None |