Detailed information of SNP:
|
SNP ID:
sf0204429556(Gbrowse)
Chromosome: chr02 Position: 4429556 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1379 | 87.02% | 12.98% |
| All Indica | 759 | 77.34% | 22.66% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 353 | 64.59% | 35.41% |
| Indica II | 203 | 92.12% | 7.88% |
| Indica Intermediate | 203 | 84.73% | 15.27% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204429556 | T->C | LOC_Os02g08340(LOC_Os02g08340.1) | Synonymous |