Detailed information of SNP:
|
SNP ID:
sf0204430390(Gbrowse)
Chromosome: chr02 Position: 4430390 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1342 | 78.99% | 21.01% |
| All Indica | 733 | 72.99% | 27.01% |
| All Japonica | 495 | 86.06% | 13.94% |
| Aus | 63 | 92.06% | 7.94% |
| Indica I | 345 | 66.38% | 33.62% |
| Indica II | 189 | 70.90% | 29.10% |
| Indica Intermediate | 199 | 86.43% | 13.57% |
| Temperate Japonica | 334 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 44.09% | 55.91% |
| Japonica Intermediate | 68 | 77.94% | 22.06% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 39 | 76.92% | 23.08% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204430390 | G->A | LOC_Os02g08340(LOC_Os02g08340.1) | SNPs that introduce stop codons |