Detailed information of SNP:
|
SNP ID:
sf0204440284(Gbrowse)
Chromosome: chr02 Position: 4440284 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 70.57% | 29.43% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 496 | 20.36% | 79.64% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 1.80% | 98.20% |
| Tropical Japonica | 94 | 78.72% | 21.28% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204440284 | A->G | LOC_Os02g08360(LOC_Os02g08360.1) | UTR_5_PRIME |