Detailed information of SNP:
|
SNP ID:
sf0204450986(Gbrowse)
Chromosome: chr02 Position: 4450986 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 67.70% | 32.30% |
| All Indica | 799 | 99.00% | 1.00% |
| All Japonica | 496 | 20.56% | 79.44% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 81.91% | 18.09% |
| Japonica Intermediate | 67 | 35.82% | 64.18% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204450986 | T->G | LOC_Os02g08364(LOC_Os02g08364.1) | INTRON |