Detailed information of SNP:
|
SNP ID:
sf0204458878(Gbrowse)
Chromosome: chr02 Position: 4458878 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 83.01% | 16.99% |
| All Indica | 793 | 85.37% | 14.63% |
| All Japonica | 497 | 79.48% | 20.52% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 374 | 93.58% | 6.42% |
| Indica II | 212 | 75.94% | 24.06% |
| Indica Intermediate | 207 | 80.19% | 19.81% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204458878 | G->A | INTERGENIC | None |