Detailed information of SNP:
|
SNP ID:
sf0204541825(Gbrowse)
Chromosome: chr02 Position: 4541825 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 89.18% | 10.82% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 400 | 65.25% | 34.75% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 249 | 53.01% | 46.99% |
| Tropical Japonica | 89 | 94.38% | 5.62% |
| Japonica Intermediate | 62 | 72.58% | 27.42% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0204541825 | T->C | INTERGENIC | None |